====== PDB Plugin ======

---- plugin ----
description: Integrated utility for Protein data base
author     : Ikuo Obataya
email      : I.Obataya[at]gmail_com
type       : syntax
lastupdate : 2018-10-25
compatible : 2016-06-26a
depends    :
conflicts  : 
similar    : pubchem, pubmed
tags       : chemistry biology science

downloadurl: https://github.com/iobataya/dokuwiki-plugin-pdb/archive/master.zip
bugtracker : https://github.com/iobataya/dokuwiki-plugin-pdb/issues
sourcerepo : https://github.com/iobataya/dokuwiki-plugin-pdb 
----

This plugin creates a link, a searchbox and protein images by using PDB ID.

This plugin caches protein images from RCSB server in /data/media/rcsb_image/ directory, and it caches structure XML summary from NCBI database in /data/media/ncbi_esummary/ directory.

Demo: http://symplus.edu-wiki.org/doku.php/en/pdb_plugin

======Functions======

**%%{{pdb>[Command]:[PDB ID]}}%%**

^  Command        ^  item  ^  function  |
^small        |image|Show a small image (82px in width) retrieved from RCSB database|
^medium       |image|Show a small image (252px in width) retrieved from RCSB database|
^large        |image|Show a small image (502px in width) retrieved from RCSB database|
^fullSmall    |image\\ link|Show a combination of an image and a short description|
^searchbox    |form |Show a searchbox for the RCSB PDB|
^link         |link |Show a link for the PDB ID|
^short        |link |Show the PDB link and brief description from NCBI Structure database|
^long         |link |Show the PDB link and detailed description from NCBI Structure database|
^structureID  |link |Show a Structure ID for the NCBI database|
^summaryXML   |xml  |Show a XML summary data from the NCBI database using Entrez Utilities|
^clear_summary     |  -  |Clear cached XML files in /data/media/ncbi_esummary|
^clear_image       |  -  |Clear cached image files in /data/media/rcsb_image|